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The FASTML Server - Server for computing Maximum Likelihood ancestral sequence reconstruction
**** IMPORTANT NOTICE: **** We are sorry for the inconvenience and hope it will be up again shortly Type your multiple sequence alignment (MSA)
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The FASTML Server - Server for computing Maximum Likelihood
ancestral sequence reconstruction
Introduction The FastML server is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. The server runs several algorit...
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The FASTML Server - Server for computing Maximum Likelihood
ancestral sequence reconstruction
outTreeFileAncestor - Ancestor file that names the internal nodes outFile_prob_joint - Likelihood file for joint reconstruction outFile_prob_marginal - Likelihood file for marginal reconstruction outF...
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The FASTML Server - Server for computing Maximum Likelihood
ancestral sequence reconstruction
FastML Gallery Click here to view an example output page for ancestral sequence reconstruction of HIV-1. Reconstructing ancestral sequences of HIV-1 is a challenging task due to its fast rate of evo...
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SOURCE
2. In order to unzip and untar the files please type: unzip fastml.tar.zip libs/phylogeny programs/fastml 3. In some operating systems, you may use the makefiles to compile the program. If this d...
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FASTML - a program for computing Maximum Likelihood ancestral sequence
reconstruction
Codon-substitution models The states of the model are the 61 sense codons (in the case of the universal genetic code). The Markov process uses a 61x61 rate matrix Q where Qij represents the substitu...