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MUSCLE
Highest accuracy, scalable to thousands of sequences
Compared to previous versions, Muscle v5 is much more accurate, is often faster, and scales to much larger
datasets. At the time of writing (late...
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USEARCH
High-throughput search and clustering
USEARCH is a unique sequence analysis tool with
thousands of users world-wide. USEARCH offers search and clustering
algorithms that are often orders of magnitud...
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Software
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URMAP ultra-fast read mapper
posted (paper).
~20% of taxonomy annotations in SILVA and Greengenes are wrong (paper).
Taxonomy prediction is <50% accurate for 16S V...
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URMAP home page
Fast, accurate read mapping
The Ultra-fast Read Mapper (URMAP) is ~10x faster than BWA
with comparable accuracy on benchmark tests.
URMAP offers faster
options when when very high accuracy is ...
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UPARSE OTU clustering
High-accuracy, high-throughput OTU clustering
UPARSE is a method for generating clusters (OTUs)
from next-generation sequencing reads of marker genes such as 16S rRNA, the
fungal ITS region and the C...
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MUSCLE documentation
Syncmers are better than minimizers
(paper).
Video talks
on 16S data analysis posted.
~20% of taxonomy annotations in SILVA and Greengenes are wrong (paper).
Taxonomy prediction is <50% accurat...