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Popular pages

  • Association analysis - PLINK 2.0

    Association analysis   (aliases: --linear, --logistic) --condition-list <variant ID file> [{dominant | recessive}] ['multiallelic'] --parameters <number(s)/range(s)...> --tests ['all'] [number(s)/r...

  • Linear scoring - PLINK 2.0

    Linear scoring                    [{center | variance-standardize | dominant | recessive}] --score-col-nums <number(s)/range(s)...> --q-score-range <range file> <data file> [i] [j] ['header'] ['min...

  • PLINK 2.0

    Source code, compilation instructions, and the like are on the developer page. Recent version history 29 Aug 2023: Fixed .pvar-writing bug that could occur when the INFO/PR flag was present in the inp...

  • Basic statistics - PLINK 2.0

    Basic statistics        ['refbins='<comma-separated bin boundaries> | 'refbins-file='<filename>]        ['alt1bins='<comma-separated bin bounds> | 'alt1bins-file='<filename>]        ['bins-on...

  • Resources - PLINK 1.9

    Resources Genotype data See the PLINK 2 Resources page for 1000 Genomes phase 3. PLINK 2 --make-bed can be used to convert those files to PLINK 1 binary format. If you really want just phase 1, click...

  • Complete flag index - PLINK 2.0

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